I love rhubarb and rhubarb season! And if you do too, you're going to love these Healthy Rhubarb Muffins. With orange and cinnamon flavors in the mix, they are a unique and delicious muffin. And you can use frozen rhubarb to make them if you don't have any fresh rhubarb.

And since it's not easy to find healthy rhubarb recipes, I worked very hard to bring down the calories, fat, and points without sacrificing any taste and was it ever a success. No one would ever suspect these are Weight Watchers Rhubarb Muffins!~ And they inspired me to create this Healthy Rhubarb Bread.
🍒Reader Review
" I have made these several times using rhubarb, or raspberries and I love them!!! So neat with the baking soda trick!! Very fluffy!" ⭐⭐⭐⭐⭐
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When I was a kid, one of my favorite things to do was grab some rhubarb from the garden, wash it off with the hose, dip it in sugar, and munch! This rhubarb muffin recipe is perfect for sprinkling a little sugar on top, giving it that little crunch that reminds me of munching on my rhubarb treat as a kid.
🥘 Ingredient Notes
I really adore this orange and cinnamon combo with rhubarb; it’s a flavor duo that really brings out the best in rhubarb. If you've never tried it, you really have to give these unique and delicious Rhubarb Orange muffins a go.
I also use the same flavors in my Rhubarb Compote and it's just as yummy! And this recipe doesn't require a lot of rhubarb (only 1.5 cups of rhubarb). I only started growing it last year and I didn't have a big harvest, so muffins were the perfect way to use a smaller batch of rhubarb.
For these healthy rhubarb muffins, you'll need:

- Canola oil and unsweetened applesauce. I use a combination of apple sauce and oil to bring down the fat and calories. I balance it because too much applesauce can make baked goods chewy.
- Freshly squeezed orange juice and orange zest. I use 1 large orange. Fresh orange juice
- Agave syrup. Agave syrup is concentrated so you use less.
- Whole wheat flour and all-purpose flour. Using a combination of flour keeps them light and not too dense, but adds the health benefits of whole wheat.
- Rhubarb. You can use fresh or frozen but measure frozen rhubarb after it's fully defrosted and drained. You will likely need to add more flour (up to ¼ cup all-purpose) to frozen rhubarb, but add it a tablespoon at a time. If using spring rhubarb, add 2 tablespoon flour, as it's more watery.
- White sparkling sugar. And the sparkling sugar looks so pretty and sparkly too, of course. However, if you can't find white sparkling sugar (I find it in the cake decorating aisle at Michaels Arts & Crafts) you can just use a little coarse white sugar. This is most used for cake decorating but adds a nice sparkle to the muffins.

📖Variations & Substitutions
- Rhubarb - you can use fresh or frozen (just be sure to fully defrost and drain and you will likely have to add more flour (up to ¼ all-purpose). * if you are using early spring rhubarb be aware that it has a higher water content - be sure to compensate by adding a little more flour (2 tbsps)
- Agave - you can substitute honey, but you'll need to double the amount and increase the flour by 2 tbsps.
- Canola Oil - you can use vegetable oil or olive oil.
- Dairy-free - Swap the Greek yogurt for a dairy-free yogurt alternative, such as coconut or almond-based yogurt.
🔪How to Make Healthy Rhubarb Muffins
PREP : Heat oven to 375 degrees F/190 degrees C. Line muffin trays with 18 paper or silicone liners.

- Step 1: With a whisk, in a large bowl, combine oil, greek yogurt, agave, orange juice, orange zest, applesauce, eggs, and vanilla extract.

- Step 2: Then add baking soda and stir. (it will foam up a little - it's meant to).

- Step 3: Stir two types of flour, baking powder, salt, brown sugar, and cinnamon together in a separate bowl.

- Step 4: Add the dry mixture to the wet mixture and mix until just combined.

- Step 5: Fold in the chopped rhubarb. NOTE: *If you are using frozen rhubarb and the batter doesn't look like this, add a little more flour (1 tablespoon at a time), up to ¼ cup. NOTE: ** If using early spring rhubarb, add an additional 2 tablespoon of flour.

- Step 6: Spoon muffin batter into muffin liners, dividing evenly by 18. Sprinkle with sparkling sugar or coarse sugar on top of the muffins, dividing evenly by 18. (* or you can do this after they are baked or both before and after!)

- Step 7: Bake on the middle rack for about 18 minutes (or until a cake tester or toothpick comes out clean.) *Rotate the muffins in the middle of the baking time for best results.

- Step 8: Cool for 5 minutes, then move to cooling rack and cool for another 5 minutes. Serve warm or cold.
Recipe Tips
- Don’t Overmix the Batter. Stir until just combined to prevent dense or tough muffins. Overmixing develops too much gluten, which affects texture.
- Use Room Temperature Ingredients. This helps everything mix evenly and results in better texture. Take eggs, yogurt, and applesauce out of the fridge for about 30 minutes before baking.
- Mix Wet & Dry Ingredients Separately First. Combine all wet ingredients in one bowl and dry ingredients in another before mixing them together. This prevents uneven distribution of ingredients.
- Chop Rhubarb Evenly. Cut rhubarb into ½-inch pieces for even distribution throughout the muffins
- Adjust for Frozen Rhubarb. If using frozen rhubarb, thaw completely and drain excess liquid. Measure after defrosting and draining.
- Add extra flour if using frozen rhubarb or early spring rhubarb. Add 1 tablespoon at a time, up to ¼ cut if the batter looks too wet.
- Bake immediately. Don't let the batter sit or make it ahead - bake it immediately. The baking soda and baking powder lose potency the longer they sit and your muffins won't rise properly.
- Rotate Muffin Pan Halfway Through Baking. For even baking, turn the pan 180° halfway through the baking time.
- Check for Doneness with a Cake Tester. Insert a cake tester or toothpick into the center of a muffin. If it comes out clean or with a few crumbs (but no wet batter), they’re done.
- Let Muffins Cool Properly – Cool in the pan for 5 minutes, then transfer to a wire rack. Cooling in the pan for too long can cause soggy bottoms.

🔢WW Points
Believe me, I speak from experience when I say it's not easy to find Weight Watchers muffins that don't have artificial sweeteners. I don't use artificial sweeteners in my baking, desserts or in anything.
Like I said, I worked hard to bring these down to 3 WW points, without sacrificing taste. And if you're looking for more desserts, sweets, and baked goods that are low in sugar, without artificial sweeteners, then check out these WW Desserts without artificial sweeteners. And if you want another fantastic WW muffin try my Healthy Carrot Muffins and my Weight Watchers Chocolate Zucchini Muffins.
To further bring down the ww points and calories, use a sugar substitute like monk fruit sweetener in place of brown sugar (but only use half the amount). You will likely need to add an additional couple of tbsps of all-purpose flour.
You can also reduce or omit the sparkling sugar topping. You can also replace half of the oil with additional unsweetened applesauce, but keep in mind the texture will be chewier.
🌡️Storage
Store these healthy rhubarb muffins in an airtight container for up to 2 days at room temperature and up to 5 days in the fridge.
Can be frozen for up to 3 months.

👪 Serving Size
This healthy rhubarb recipe makes 18 muffins. However, you can half, double, or triple the recipe by clicking on the serving number and selecting the number of servings. The ingredient quantities will automatically adjust. You'll need additional muffin tins if you increase the recipe.
Everything is late and grows slower where I live (in Calgary). And in Canada, depending on where you live, the type of rhubarb you grow, how mature the plants are and where it's planted, you can be harvesting your rhubarb anytime between April and July! You can read more about how to grow rhubarb in Canada HERE.

But whether you have fresh rhubarb on hand in July or a stock of frozen rhubarb in your freezer (yes, you can freeze rhubarb!) you'll want to make these Healthy Rhubarb Muffins!
❔Recipe FAQ's
Overmixing the batter can result in dense muffins. Be sure to mix only until the ingredients are just combined. Also, using too much applesauce can make them chewy, so keep the balance as written in the recipe.
Let them thaw at room temperature or pop them in the microwave for about 20-30 seconds. If you want a crispy top, warm them in a 350°F oven for about 5 minutes
These Healthy Rhubarb Muffins are made with better-for-you ingredients while still being delicious! Here’s what makes them a healthier option:
Lower in Fat – Instead of using only oil, this recipe includes Greek yogurt and unsweetened applesauce, reducing the overall fat content while keeping the muffins moist.
Whole Grains – A combination of whole wheat flour and all-purpose flour boosts fiber content while maintaining a light and fluffy texture.
Lower in Calories – At only 91 calories per muffin, these are a lighter alternative to traditional muffins, making them a great option for a healthy snack or breakfast.
No Artificial Sweeteners – Unlike many "diet" muffins, these are naturally sweetened without using artificial sweeteners.
Personally, I love them best with fresh rhubarb because, as one of my recipe testers said, "the little pieces of rhubarb literally melt in your mouth." But in my opinion, they still melt in your mouth, even using frozen rhubarb.
So, if you're looking for easy breakfasts or healthy rhubarb recipes, you'll love this! And be sure to check out these 15 Rhubarb Breakfast Recipes!
📋More Healthy Muffin Recipes
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📋 Healthy Rhubarb Muffins Recipe
Equipment
Ingredients
- ¼ cup canola oil
- 1 cup non- fat plain Greek yogurt (0%)
- ½ cup freshly squeezed orange juice * the juice from about 1 large orange
- 5 teaspoon agave syrup
- ¼ cup unsweetened applesauce
- 2 eggs
- 1 teaspoon vanilla extract
- 1 teaspoon orange zest
- 1 teaspoon baking soda
- 1 cup whole wheat flour
- 1 cup all purpose flour
- ¼ cup brown sugar
- 2 teaspoons baking powder
- ¼ teaspoon salt
- 1 ½ teaspoon cinnamon
- 1 ½ cups rhubarb, chopped cut into ½ inch pieces
- 1 tablespoon white sparkling sugar for sprinkling tops
Instructions
- Heat oven to 375 degrees F/190 degrees C. Line muffin trays with 18 paper or silicone liners.
- With a mixing spoon, in large bowl, combine oil, greek yogurt, agave, orange juice, orange zest, applesauce, eggs and vanilla extract.¼ cup canola oil, 1 cup non- fat plain Greek yogurt (0%), ½ cup freshly squeezed orange juice, 5 teaspoon agave syrup, ¼ cup unsweetened applesauce, 2 eggs, 1 teaspoon vanilla extract, 1 teaspoon orange zest
- Then add baking soda and stir (it will foam up a little - it's meant to).1 teaspoon baking soda
- Stir two types of flour, baking powder, salt, brown sugar and cinnamon together in a separate bowl.1 cup whole wheat flour, 1 cup all purpose flour, ¼ cup brown sugar, 2 teaspoons baking powder, ¼ teaspoon salt, 1 ½ teaspoon cinnamon
- Add the dry mixture to the wet mixture and mix until just combined.
- Fold in the chopped rhubarb.1 ½ cups rhubarb, chopped
- Spoon muffin batter into muffin liners, dividing evenly by 18.
- Sprinkle with sparkling sugar or course sugar on top of the muffins, dividing evenly by 18. (* or you can do this after they are baked)1 tablespoon white sparkling sugar
- Bake on middle rack for about 18 minutes (or until a cake tester or toothpick comes out clean.) *Rotate the muffins in the middle of the baking time for best results.
- Cool for 5 minutes, then move to cooling rack and cool for another 5 minutes. Serve warm or cold.
Notes
-
- Don’t Overmix the Batter. Stir until just combined to prevent dense or tough muffins. Overmixing develops too much gluten, which affects texture.
-
- Use Room Temperature Ingredients. This helps everything mix evenly and results in better texture. Take eggs, yogurt, and applesauce out of the fridge for about 30 minutes before baking.
-
- Mix Wet & Dry Ingredients Separately First. Combine all wet ingredients in one bowl and dry ingredients in another before mixing them together. This prevents uneven distribution of ingredients.
-
- Chop Rhubarb Evenly. Cut rhubarb into ½ inch pieces for even distribution throughout the muffins
-
- Adjust for Frozen Rhubarb. If using frozen rhubarb, thaw completely and drain excess liquid. Measure AFTER defrosting and draining.
-
- Add extra flour if using frozen rhubarb or early spring rhubarb. Add 1 tablespoon at a time, up to ¼ cut if the batter looks too wet.
-
- Bake immediately. Don't let the batter sit or make it ahead - bake it immediately. The baking soda and baking powder lose potency the longer they sit and your muffins won't rise properly.
-
- Rotate Muffin Pan Halfway Through Baking. For even baking, turn the pan 180° halfway through the baking time.
-
- Check for Doneness with a Cake Tester. Insert a cake tester or toothpick into the center of a muffin. If it comes out clean or with a few crumbs (but no wet batter), they’re done.
-
- Let Muffins Cool Properly – Cool in the pan for 5 minutes, then transfer to a wire rack. Cooling in the pan for too long can cause soggy bottoms.
Joan
I didn't have very good luck with these at all. I substituted honey for the agave but everything else followed the recipe. Baked for 18 minutes and they were still quite soft when I pressed on the tops, so I put them in for a few more minutes. Still kind of soft when I took them out. Stuck to the muffin cups. Not at all cooked inside, kind of like eating dough. The taste was good. I'm not sure what went wrong.
Terri Gilson
Hi Joan: sorry to hear you had issues! Yes, if replacing honey for agave you'd need to compensate for the difference in that liquid ingredient. I'll add that to the recipe. Sometimes I assume things I shouldn't. Also, if you don't drain your defrosted rhubarb enough, the dough will be too gooey. And early spring rhubarb has a higher water content so you need to compensate for that.
Terri
Mjae
I’ve never had rhubarb muffins before but last fall my neighbor gifted me with a rhubarb plant and it’s grown so much. So I’m trying my way through as many rhubarb recipes as I can find. These were absolutely delicious. So soft and so much flavour. Printed your recipe and will definitely be making again. Thank you.
Mia
Great recipe. Bakes nicely in a square pan too. Next time, I'll use 2 full cups of rhubarb. My first taster says, "Yummy!" and, "Oh, there's some rhubarb." This is why I'm thinking to add some more of it. Thank you for putting this together!
Terri Gilson
Thanks-glad to hear it’s taster approved! Sure, why not add more fhubarb! 😊
Lindsay GOODMAN
A tasty muffin, they don’t rise up out of the cup very much, but still came out fluffy. I did substitute the whole grain flour for almond flour (just because it’s what I had on hand), other than that I followed the recipe to a “t”. I cut the rhubarb pieces quite small (1/4” cubes), but there was plenty of rhubarb! For a healthier alternative these muffin are definitely a high ranking treat!
Pam
I missed the baking soda tip and even missed putting it in the muffins! I used 75% whole wheat flour and 25% white flour. They still turned out delicious and fluffy! I can see this as a great base recipe for so many muffin flavors, thanks for the recipe!
Terri Gilson
That's great they still turned out great, Pam! 🙂
Sheila McRae
I have made these several times using rhubarb, or raspberries and I love them!!! So neat with the baking soda trick!! Very fluffy!
Terri Gilson
So glad to hear you love them! Can't wait for rhubarb season again 🙂
Roxanne
Hi!
I am going to give these a try. Are these mini muffins or regular size muffins?
Terri Gilson
Hi Roxanne,
They are regular sized muffins! 🙂 enjoy!
Melanie Cagle
These muffins look delicious! I will definitely give them a try as Rhubarb is one of my favorite indulges - the fact it's healthy.... perfect!! Your picture BTW is great, I love the sugary sprinkles on top, makes me lick my lips!
Terri Gilson
Thanks, Melanie! I hope you enjoy them 🙂